1229 lines
50 KiB
Python
1229 lines
50 KiB
Python
"""
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Vector Autoregressive Moving Average with eXogenous regressors model
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Author: Chad Fulton
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License: Simplified-BSD
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"""
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import contextlib
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from warnings import warn
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import pandas as pd
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import numpy as np
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from statsmodels.compat.pandas import Appender
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from statsmodels.tools.tools import Bunch
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from statsmodels.tools.data import _is_using_pandas
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from statsmodels.tsa.vector_ar import var_model
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import statsmodels.base.wrapper as wrap
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from statsmodels.tools.sm_exceptions import EstimationWarning
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from .kalman_filter import INVERT_UNIVARIATE, SOLVE_LU
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from .mlemodel import MLEModel, MLEResults, MLEResultsWrapper
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from .initialization import Initialization
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from .tools import (
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is_invertible, concat, prepare_exog,
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constrain_stationary_multivariate, unconstrain_stationary_multivariate,
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prepare_trend_spec, prepare_trend_data
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)
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class VARMAX(MLEModel):
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r"""
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Vector Autoregressive Moving Average with eXogenous regressors model
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Parameters
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----------
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endog : array_like
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The observed time-series process :math:`y`, , shaped nobs x k_endog.
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exog : array_like, optional
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Array of exogenous regressors, shaped nobs x k.
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order : iterable
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The (p,q) order of the model for the number of AR and MA parameters to
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use.
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trend : str{'n','c','t','ct'} or iterable, optional
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Parameter controlling the deterministic trend polynomial :math:`A(t)`.
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Can be specified as a string where 'c' indicates a constant (i.e. a
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degree zero component of the trend polynomial), 't' indicates a
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linear trend with time, and 'ct' is both. Can also be specified as an
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iterable defining the non-zero polynomial exponents to include, in
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increasing order. For example, `[1,1,0,1]` denotes
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:math:`a + bt + ct^3`. Default is a constant trend component.
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error_cov_type : {'diagonal', 'unstructured'}, optional
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The structure of the covariance matrix of the error term, where
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"unstructured" puts no restrictions on the matrix and "diagonal"
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requires it to be a diagonal matrix (uncorrelated errors). Default is
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"unstructured".
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measurement_error : bool, optional
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Whether or not to assume the endogenous observations `endog` were
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measured with error. Default is False.
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enforce_stationarity : bool, optional
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Whether or not to transform the AR parameters to enforce stationarity
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in the autoregressive component of the model. Default is True.
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enforce_invertibility : bool, optional
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Whether or not to transform the MA parameters to enforce invertibility
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in the moving average component of the model. Default is True.
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trend_offset : int, optional
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The offset at which to start time trend values. Default is 1, so that
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if `trend='t'` the trend is equal to 1, 2, ..., nobs. Typically is only
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set when the model created by extending a previous dataset.
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**kwargs
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Keyword arguments may be used to provide default values for state space
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matrices or for Kalman filtering options. See `Representation`, and
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`KalmanFilter` for more details.
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Attributes
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----------
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order : iterable
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The (p,q) order of the model for the number of AR and MA parameters to
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use.
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trend : str{'n','c','t','ct'} or iterable
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Parameter controlling the deterministic trend polynomial :math:`A(t)`.
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Can be specified as a string where 'c' indicates a constant (i.e. a
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degree zero component of the trend polynomial), 't' indicates a
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linear trend with time, and 'ct' is both. Can also be specified as an
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iterable defining the non-zero polynomial exponents to include, in
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increasing order. For example, `[1,1,0,1]` denotes
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:math:`a + bt + ct^3`.
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error_cov_type : {'diagonal', 'unstructured'}, optional
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The structure of the covariance matrix of the error term, where
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"unstructured" puts no restrictions on the matrix and "diagonal"
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requires it to be a diagonal matrix (uncorrelated errors). Default is
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"unstructured".
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measurement_error : bool, optional
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Whether or not to assume the endogenous observations `endog` were
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measured with error. Default is False.
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enforce_stationarity : bool, optional
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Whether or not to transform the AR parameters to enforce stationarity
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in the autoregressive component of the model. Default is True.
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enforce_invertibility : bool, optional
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Whether or not to transform the MA parameters to enforce invertibility
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in the moving average component of the model. Default is True.
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Notes
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-----
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Generically, the VARMAX model is specified (see for example chapter 18 of
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[1]_):
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.. math::
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y_t = A(t) + A_1 y_{t-1} + \dots + A_p y_{t-p} + B x_t + \epsilon_t +
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M_1 \epsilon_{t-1} + \dots M_q \epsilon_{t-q}
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where :math:`\epsilon_t \sim N(0, \Omega)`, and where :math:`y_t` is a
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`k_endog x 1` vector. Additionally, this model allows considering the case
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where the variables are measured with error.
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Note that in the full VARMA(p,q) case there is a fundamental identification
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problem in that the coefficient matrices :math:`\{A_i, M_j\}` are not
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generally unique, meaning that for a given time series process there may
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be multiple sets of matrices that equivalently represent it. See Chapter 12
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of [1]_ for more information. Although this class can be used to estimate
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VARMA(p,q) models, a warning is issued to remind users that no steps have
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been taken to ensure identification in this case.
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References
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----------
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.. [1] Lütkepohl, Helmut. 2007.
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New Introduction to Multiple Time Series Analysis.
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Berlin: Springer.
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"""
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def __init__(self, endog, exog=None, order=(1, 0), trend='c',
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error_cov_type='unstructured', measurement_error=False,
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enforce_stationarity=True, enforce_invertibility=True,
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trend_offset=1, **kwargs):
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# Model parameters
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self.error_cov_type = error_cov_type
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self.measurement_error = measurement_error
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self.enforce_stationarity = enforce_stationarity
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self.enforce_invertibility = enforce_invertibility
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# Save the given orders
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self.order = order
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# Model orders
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self.k_ar = int(order[0])
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self.k_ma = int(order[1])
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# Check for valid model
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if error_cov_type not in ['diagonal', 'unstructured']:
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raise ValueError('Invalid error covariance matrix type'
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' specification.')
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if self.k_ar == 0 and self.k_ma == 0:
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raise ValueError('Invalid VARMAX(p,q) specification; at least one'
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' p,q must be greater than zero.')
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# Warn for VARMA model
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if self.k_ar > 0 and self.k_ma > 0:
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warn('Estimation of VARMA(p,q) models is not generically robust,'
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' due especially to identification issues.',
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EstimationWarning)
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# Trend
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self.trend = trend
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self.trend_offset = trend_offset
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self.polynomial_trend, self.k_trend = prepare_trend_spec(self.trend)
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self._trend_is_const = (self.polynomial_trend.size == 1 and
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self.polynomial_trend[0] == 1)
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# Exogenous data
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(self.k_exog, exog) = prepare_exog(exog)
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# Note: at some point in the future might add state regression, as in
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# SARIMAX.
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self.mle_regression = self.k_exog > 0
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# We need to have an array or pandas at this point
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if not _is_using_pandas(endog, None):
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endog = np.asanyarray(endog)
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# Model order
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# Used internally in various places
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_min_k_ar = max(self.k_ar, 1)
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self._k_order = _min_k_ar + self.k_ma
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# Number of states
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k_endog = endog.shape[1]
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k_posdef = k_endog
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k_states = k_endog * self._k_order
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# By default, initialize as stationary
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kwargs.setdefault('initialization', 'stationary')
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# By default, use LU decomposition
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kwargs.setdefault('inversion_method', INVERT_UNIVARIATE | SOLVE_LU)
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# Initialize the state space model
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super().__init__(
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endog, exog=exog, k_states=k_states, k_posdef=k_posdef, **kwargs
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)
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# Set as time-varying model if we have time-trend or exog
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if self.k_exog > 0 or (self.k_trend > 0 and not self._trend_is_const):
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self.ssm._time_invariant = False
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# Initialize the parameters
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self.parameters = {}
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self.parameters['trend'] = self.k_endog * self.k_trend
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self.parameters['ar'] = self.k_endog**2 * self.k_ar
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self.parameters['ma'] = self.k_endog**2 * self.k_ma
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self.parameters['regression'] = self.k_endog * self.k_exog
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if self.error_cov_type == 'diagonal':
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self.parameters['state_cov'] = self.k_endog
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# These parameters fill in a lower-triangular matrix which is then
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# dotted with itself to get a positive definite matrix.
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elif self.error_cov_type == 'unstructured':
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self.parameters['state_cov'] = (
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int(self.k_endog * (self.k_endog + 1) / 2)
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)
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self.parameters['obs_cov'] = self.k_endog * self.measurement_error
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self.k_params = sum(self.parameters.values())
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# Initialize trend data: we create trend data with one more observation
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# than we actually have, to make it easier to insert the appropriate
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# trend component into the final state intercept.
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trend_data = prepare_trend_data(
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self.polynomial_trend, self.k_trend, self.nobs + 1,
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offset=self.trend_offset)
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self._trend_data = trend_data[:-1]
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self._final_trend = trend_data[-1:]
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# Initialize known elements of the state space matrices
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# If we have exog effects, then the state intercept needs to be
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# time-varying
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if (self.k_trend > 0 and not self._trend_is_const) or self.k_exog > 0:
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self.ssm['state_intercept'] = np.zeros((self.k_states, self.nobs))
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# self.ssm['obs_intercept'] = np.zeros((self.k_endog, self.nobs))
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# The design matrix is just an identity for the first k_endog states
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idx = np.diag_indices(self.k_endog)
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self.ssm[('design',) + idx] = 1
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# The transition matrix is described in four blocks, where the upper
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# left block is in companion form with the autoregressive coefficient
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# matrices (so it is shaped k_endog * k_ar x k_endog * k_ar) ...
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if self.k_ar > 0:
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idx = np.diag_indices((self.k_ar - 1) * self.k_endog)
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idx = idx[0] + self.k_endog, idx[1]
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self.ssm[('transition',) + idx] = 1
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# ... and the lower right block is in companion form with zeros as the
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# coefficient matrices (it is shaped k_endog * k_ma x k_endog * k_ma).
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idx = np.diag_indices((self.k_ma - 1) * self.k_endog)
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idx = (idx[0] + (_min_k_ar + 1) * self.k_endog,
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idx[1] + _min_k_ar * self.k_endog)
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self.ssm[('transition',) + idx] = 1
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# The selection matrix is described in two blocks, where the upper
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# block selects the all k_posdef errors in the first k_endog rows
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# (the upper block is shaped k_endog * k_ar x k) and the lower block
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# also selects all k_posdef errors in the first k_endog rows (the lower
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# block is shaped k_endog * k_ma x k).
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idx = np.diag_indices(self.k_endog)
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self.ssm[('selection',) + idx] = 1
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idx = idx[0] + _min_k_ar * self.k_endog, idx[1]
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if self.k_ma > 0:
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self.ssm[('selection',) + idx] = 1
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# Cache some indices
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if self._trend_is_const and self.k_exog == 0:
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self._idx_state_intercept = np.s_['state_intercept', :k_endog, :]
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elif self.k_trend > 0 or self.k_exog > 0:
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self._idx_state_intercept = np.s_['state_intercept', :k_endog, :-1]
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if self.k_ar > 0:
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self._idx_transition = np.s_['transition', :k_endog, :]
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else:
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self._idx_transition = np.s_['transition', :k_endog, k_endog:]
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if self.error_cov_type == 'diagonal':
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self._idx_state_cov = (
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('state_cov',) + np.diag_indices(self.k_endog))
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elif self.error_cov_type == 'unstructured':
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self._idx_lower_state_cov = np.tril_indices(self.k_endog)
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if self.measurement_error:
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self._idx_obs_cov = ('obs_cov',) + np.diag_indices(self.k_endog)
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# Cache some slices
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def _slice(key, offset):
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length = self.parameters[key]
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param_slice = np.s_[offset:offset + length]
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offset += length
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return param_slice, offset
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offset = 0
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self._params_trend, offset = _slice('trend', offset)
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self._params_ar, offset = _slice('ar', offset)
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self._params_ma, offset = _slice('ma', offset)
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self._params_regression, offset = _slice('regression', offset)
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self._params_state_cov, offset = _slice('state_cov', offset)
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self._params_obs_cov, offset = _slice('obs_cov', offset)
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# Variable holding optional final `exog`
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# (note: self._final_trend was set earlier)
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self._final_exog = None
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# Update _init_keys attached by super
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self._init_keys += ['order', 'trend', 'error_cov_type',
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'measurement_error', 'enforce_stationarity',
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'enforce_invertibility'] + list(kwargs.keys())
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def clone(self, endog, exog=None, **kwargs):
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return self._clone_from_init_kwds(endog, exog=exog, **kwargs)
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@property
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def _res_classes(self):
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return {'fit': (VARMAXResults, VARMAXResultsWrapper)}
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@property
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def start_params(self):
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params = np.zeros(self.k_params, dtype=np.float64)
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# A. Run a multivariate regression to get beta estimates
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endog = pd.DataFrame(self.endog.copy())
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endog = endog.interpolate()
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endog = np.require(endog.bfill(), requirements="W")
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exog = None
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if self.k_trend > 0 and self.k_exog > 0:
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exog = np.c_[self._trend_data, self.exog]
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elif self.k_trend > 0:
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exog = self._trend_data
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elif self.k_exog > 0:
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exog = self.exog
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# Although the Kalman filter can deal with missing values in endog,
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# conditional sum of squares cannot
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if np.any(np.isnan(endog)):
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mask = ~np.any(np.isnan(endog), axis=1)
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endog = endog[mask]
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if exog is not None:
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exog = exog[mask]
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# Regression and trend effects via OLS
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trend_params = np.zeros(0)
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exog_params = np.zeros(0)
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if self.k_trend > 0 or self.k_exog > 0:
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trendexog_params = np.linalg.pinv(exog).dot(endog)
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endog -= np.dot(exog, trendexog_params)
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if self.k_trend > 0:
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trend_params = trendexog_params[:self.k_trend].T
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if self.k_endog > 0:
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exog_params = trendexog_params[self.k_trend:].T
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# B. Run a VAR model on endog to get trend, AR parameters
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ar_params = []
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k_ar = self.k_ar if self.k_ar > 0 else 1
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mod_ar = var_model.VAR(endog)
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res_ar = mod_ar.fit(maxlags=k_ar, ic=None, trend='n')
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if self.k_ar > 0:
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ar_params = np.array(res_ar.params).T.ravel()
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endog = res_ar.resid
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# Test for stationarity
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if self.k_ar > 0 and self.enforce_stationarity:
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coefficient_matrices = (
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ar_params.reshape(
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self.k_endog * self.k_ar, self.k_endog
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).T
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).reshape(self.k_endog, self.k_endog, self.k_ar).T
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stationary = is_invertible([1] + list(-coefficient_matrices))
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if not stationary:
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warn('Non-stationary starting autoregressive parameters'
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' found. Using zeros as starting parameters.')
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ar_params *= 0
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# C. Run a VAR model on the residuals to get MA parameters
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ma_params = []
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if self.k_ma > 0:
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mod_ma = var_model.VAR(endog)
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res_ma = mod_ma.fit(maxlags=self.k_ma, ic=None, trend='n')
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ma_params = np.array(res_ma.params.T).ravel()
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# Test for invertibility
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if self.enforce_invertibility:
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coefficient_matrices = (
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ma_params.reshape(
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self.k_endog * self.k_ma, self.k_endog
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).T
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).reshape(self.k_endog, self.k_endog, self.k_ma).T
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invertible = is_invertible([1] + list(-coefficient_matrices))
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if not invertible:
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warn('Non-stationary starting moving-average parameters'
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' found. Using zeros as starting parameters.')
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ma_params *= 0
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# Transform trend / exog params from mean form to intercept form
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|
if self.k_ar > 0 and (self.k_trend > 0 or self.mle_regression):
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coefficient_matrices = (
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ar_params.reshape(
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self.k_endog * self.k_ar, self.k_endog
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).T
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).reshape(self.k_endog, self.k_endog, self.k_ar).T
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tmp = np.eye(self.k_endog) - np.sum(coefficient_matrices, axis=0)
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if self.k_trend > 0:
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trend_params = np.dot(tmp, trend_params)
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if self.mle_regression > 0:
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exog_params = np.dot(tmp, exog_params)
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# 1. Intercept terms
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if self.k_trend > 0:
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params[self._params_trend] = trend_params.ravel()
|
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# 2. AR terms
|
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if self.k_ar > 0:
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params[self._params_ar] = ar_params
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# 3. MA terms
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|
if self.k_ma > 0:
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params[self._params_ma] = ma_params
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# 4. Regression terms
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|
if self.mle_regression:
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params[self._params_regression] = exog_params.ravel()
|
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|
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# 5. State covariance terms
|
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if self.error_cov_type == 'diagonal':
|
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params[self._params_state_cov] = res_ar.sigma_u.diagonal()
|
|
elif self.error_cov_type == 'unstructured':
|
|
cov_factor = np.linalg.cholesky(res_ar.sigma_u)
|
|
params[self._params_state_cov] = (
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cov_factor[self._idx_lower_state_cov].ravel())
|
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|
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# 5. Measurement error variance terms
|
|
if self.measurement_error:
|
|
if self.k_ma > 0:
|
|
params[self._params_obs_cov] = res_ma.sigma_u.diagonal()
|
|
else:
|
|
params[self._params_obs_cov] = res_ar.sigma_u.diagonal()
|
|
|
|
return params
|
|
|
|
@property
|
|
def param_names(self):
|
|
param_names = []
|
|
endog_names = self.endog_names
|
|
if not isinstance(self.endog_names, list):
|
|
endog_names = [endog_names]
|
|
|
|
# 1. Intercept terms
|
|
if self.k_trend > 0:
|
|
for j in range(self.k_endog):
|
|
for i in self.polynomial_trend.nonzero()[0]:
|
|
if i == 0:
|
|
param_names += ['intercept.%s' % endog_names[j]]
|
|
elif i == 1:
|
|
param_names += ['drift.%s' % endog_names[j]]
|
|
else:
|
|
param_names += ['trend.%d.%s' % (i, endog_names[j])]
|
|
|
|
# 2. AR terms
|
|
param_names += [
|
|
'L%d.%s.%s' % (i+1, endog_names[k], endog_names[j])
|
|
for j in range(self.k_endog)
|
|
for i in range(self.k_ar)
|
|
for k in range(self.k_endog)
|
|
]
|
|
|
|
# 3. MA terms
|
|
param_names += [
|
|
'L%d.e(%s).%s' % (i+1, endog_names[k], endog_names[j])
|
|
for j in range(self.k_endog)
|
|
for i in range(self.k_ma)
|
|
for k in range(self.k_endog)
|
|
]
|
|
|
|
# 4. Regression terms
|
|
param_names += [
|
|
f'beta.{self.exog_names[j]}.{endog_names[i]}'
|
|
for i in range(self.k_endog)
|
|
for j in range(self.k_exog)
|
|
]
|
|
|
|
# 5. State covariance terms
|
|
if self.error_cov_type == 'diagonal':
|
|
param_names += [
|
|
'sigma2.%s' % endog_names[i]
|
|
for i in range(self.k_endog)
|
|
]
|
|
elif self.error_cov_type == 'unstructured':
|
|
param_names += [
|
|
('sqrt.var.%s' % endog_names[i] if i == j else
|
|
f'sqrt.cov.{endog_names[j]}.{endog_names[i]}')
|
|
for i in range(self.k_endog)
|
|
for j in range(i+1)
|
|
]
|
|
|
|
# 5. Measurement error variance terms
|
|
if self.measurement_error:
|
|
param_names += [
|
|
'measurement_variance.%s' % endog_names[i]
|
|
for i in range(self.k_endog)
|
|
]
|
|
|
|
return param_names
|
|
|
|
def transform_params(self, unconstrained):
|
|
"""
|
|
Transform unconstrained parameters used by the optimizer to constrained
|
|
parameters used in likelihood evaluation
|
|
|
|
Parameters
|
|
----------
|
|
unconstrained : array_like
|
|
Array of unconstrained parameters used by the optimizer, to be
|
|
transformed.
|
|
|
|
Returns
|
|
-------
|
|
constrained : array_like
|
|
Array of constrained parameters which may be used in likelihood
|
|
evaluation.
|
|
|
|
Notes
|
|
-----
|
|
Constrains the factor transition to be stationary and variances to be
|
|
positive.
|
|
"""
|
|
unconstrained = np.array(unconstrained, ndmin=1)
|
|
constrained = np.zeros(unconstrained.shape, dtype=unconstrained.dtype)
|
|
|
|
# 1. Intercept terms: nothing to do
|
|
constrained[self._params_trend] = unconstrained[self._params_trend]
|
|
|
|
# 2. AR terms: optionally force to be stationary
|
|
if self.k_ar > 0 and self.enforce_stationarity:
|
|
# Create the state covariance matrix
|
|
if self.error_cov_type == 'diagonal':
|
|
state_cov = np.diag(unconstrained[self._params_state_cov]**2)
|
|
elif self.error_cov_type == 'unstructured':
|
|
state_cov_lower = np.zeros(self.ssm['state_cov'].shape,
|
|
dtype=unconstrained.dtype)
|
|
state_cov_lower[self._idx_lower_state_cov] = (
|
|
unconstrained[self._params_state_cov])
|
|
state_cov = np.dot(state_cov_lower, state_cov_lower.T)
|
|
|
|
# Transform the parameters
|
|
coefficients = unconstrained[self._params_ar].reshape(
|
|
self.k_endog, self.k_endog * self.k_ar)
|
|
coefficient_matrices, variance = (
|
|
constrain_stationary_multivariate(coefficients, state_cov))
|
|
constrained[self._params_ar] = coefficient_matrices.ravel()
|
|
else:
|
|
constrained[self._params_ar] = unconstrained[self._params_ar]
|
|
|
|
# 3. MA terms: optionally force to be invertible
|
|
if self.k_ma > 0 and self.enforce_invertibility:
|
|
# Transform the parameters, using an identity variance matrix
|
|
state_cov = np.eye(self.k_endog, dtype=unconstrained.dtype)
|
|
coefficients = unconstrained[self._params_ma].reshape(
|
|
self.k_endog, self.k_endog * self.k_ma)
|
|
coefficient_matrices, variance = (
|
|
constrain_stationary_multivariate(coefficients, state_cov))
|
|
constrained[self._params_ma] = coefficient_matrices.ravel()
|
|
else:
|
|
constrained[self._params_ma] = unconstrained[self._params_ma]
|
|
|
|
# 4. Regression terms: nothing to do
|
|
constrained[self._params_regression] = (
|
|
unconstrained[self._params_regression])
|
|
|
|
# 5. State covariance terms
|
|
# If we have variances, force them to be positive
|
|
if self.error_cov_type == 'diagonal':
|
|
constrained[self._params_state_cov] = (
|
|
unconstrained[self._params_state_cov]**2)
|
|
# Otherwise, nothing needs to be done
|
|
elif self.error_cov_type == 'unstructured':
|
|
constrained[self._params_state_cov] = (
|
|
unconstrained[self._params_state_cov])
|
|
|
|
# 5. Measurement error variance terms
|
|
if self.measurement_error:
|
|
# Force these to be positive
|
|
constrained[self._params_obs_cov] = (
|
|
unconstrained[self._params_obs_cov]**2)
|
|
|
|
return constrained
|
|
|
|
def untransform_params(self, constrained):
|
|
"""
|
|
Transform constrained parameters used in likelihood evaluation
|
|
to unconstrained parameters used by the optimizer.
|
|
|
|
Parameters
|
|
----------
|
|
constrained : array_like
|
|
Array of constrained parameters used in likelihood evaluation, to
|
|
be transformed.
|
|
|
|
Returns
|
|
-------
|
|
unconstrained : array_like
|
|
Array of unconstrained parameters used by the optimizer.
|
|
"""
|
|
constrained = np.array(constrained, ndmin=1)
|
|
unconstrained = np.zeros(constrained.shape, dtype=constrained.dtype)
|
|
|
|
# 1. Intercept terms: nothing to do
|
|
unconstrained[self._params_trend] = constrained[self._params_trend]
|
|
|
|
# 2. AR terms: optionally were forced to be stationary
|
|
if self.k_ar > 0 and self.enforce_stationarity:
|
|
# Create the state covariance matrix
|
|
if self.error_cov_type == 'diagonal':
|
|
state_cov = np.diag(constrained[self._params_state_cov])
|
|
elif self.error_cov_type == 'unstructured':
|
|
state_cov_lower = np.zeros(self.ssm['state_cov'].shape,
|
|
dtype=constrained.dtype)
|
|
state_cov_lower[self._idx_lower_state_cov] = (
|
|
constrained[self._params_state_cov])
|
|
state_cov = np.dot(state_cov_lower, state_cov_lower.T)
|
|
|
|
# Transform the parameters
|
|
coefficients = constrained[self._params_ar].reshape(
|
|
self.k_endog, self.k_endog * self.k_ar)
|
|
unconstrained_matrices, variance = (
|
|
unconstrain_stationary_multivariate(coefficients, state_cov))
|
|
unconstrained[self._params_ar] = unconstrained_matrices.ravel()
|
|
else:
|
|
unconstrained[self._params_ar] = constrained[self._params_ar]
|
|
|
|
# 3. MA terms: optionally were forced to be invertible
|
|
if self.k_ma > 0 and self.enforce_invertibility:
|
|
# Transform the parameters, using an identity variance matrix
|
|
state_cov = np.eye(self.k_endog, dtype=constrained.dtype)
|
|
coefficients = constrained[self._params_ma].reshape(
|
|
self.k_endog, self.k_endog * self.k_ma)
|
|
unconstrained_matrices, variance = (
|
|
unconstrain_stationary_multivariate(coefficients, state_cov))
|
|
unconstrained[self._params_ma] = unconstrained_matrices.ravel()
|
|
else:
|
|
unconstrained[self._params_ma] = constrained[self._params_ma]
|
|
|
|
# 4. Regression terms: nothing to do
|
|
unconstrained[self._params_regression] = (
|
|
constrained[self._params_regression])
|
|
|
|
# 5. State covariance terms
|
|
# If we have variances, then these were forced to be positive
|
|
if self.error_cov_type == 'diagonal':
|
|
unconstrained[self._params_state_cov] = (
|
|
constrained[self._params_state_cov]**0.5)
|
|
# Otherwise, nothing needs to be done
|
|
elif self.error_cov_type == 'unstructured':
|
|
unconstrained[self._params_state_cov] = (
|
|
constrained[self._params_state_cov])
|
|
|
|
# 5. Measurement error variance terms
|
|
if self.measurement_error:
|
|
# These were forced to be positive
|
|
unconstrained[self._params_obs_cov] = (
|
|
constrained[self._params_obs_cov]**0.5)
|
|
|
|
return unconstrained
|
|
|
|
def _validate_can_fix_params(self, param_names):
|
|
super()._validate_can_fix_params(param_names)
|
|
|
|
ix = np.cumsum(list(self.parameters.values()))[:-1]
|
|
(_, ar_names, ma_names, _, _, _) = (
|
|
arr.tolist() for arr in np.array_split(self.param_names, ix))
|
|
|
|
if self.enforce_stationarity and self.k_ar > 0:
|
|
if self.k_endog > 1 or self.k_ar > 1:
|
|
fix_all = param_names.issuperset(ar_names)
|
|
fix_any = (
|
|
len(param_names.intersection(ar_names)) > 0)
|
|
if fix_any and not fix_all:
|
|
raise ValueError(
|
|
'Cannot fix individual autoregressive parameters'
|
|
' when `enforce_stationarity=True`. In this case,'
|
|
' must either fix all autoregressive parameters or'
|
|
' none.')
|
|
if self.enforce_invertibility and self.k_ma > 0:
|
|
if self.k_endog or self.k_ma > 1:
|
|
fix_all = param_names.issuperset(ma_names)
|
|
fix_any = (
|
|
len(param_names.intersection(ma_names)) > 0)
|
|
if fix_any and not fix_all:
|
|
raise ValueError(
|
|
'Cannot fix individual moving average parameters'
|
|
' when `enforce_invertibility=True`. In this case,'
|
|
' must either fix all moving average parameters or'
|
|
' none.')
|
|
|
|
def update(self, params, transformed=True, includes_fixed=False,
|
|
complex_step=False):
|
|
params = self.handle_params(params, transformed=transformed,
|
|
includes_fixed=includes_fixed)
|
|
|
|
# 1. State intercept
|
|
# - Exog
|
|
if self.mle_regression:
|
|
exog_params = params[self._params_regression].reshape(
|
|
self.k_endog, self.k_exog).T
|
|
intercept = np.dot(self.exog[1:], exog_params)
|
|
self.ssm[self._idx_state_intercept] = intercept.T
|
|
|
|
if self._final_exog is not None:
|
|
self.ssm['state_intercept', :self.k_endog, -1] = np.dot(
|
|
self._final_exog, exog_params)
|
|
|
|
# - Trend
|
|
if self.k_trend > 0:
|
|
# If we did not set the intercept above, zero it out so we can
|
|
# just += later
|
|
if not self.mle_regression:
|
|
zero = np.array(0, dtype=params.dtype)
|
|
self.ssm['state_intercept', :] = zero
|
|
|
|
trend_params = params[self._params_trend].reshape(
|
|
self.k_endog, self.k_trend).T
|
|
if self._trend_is_const:
|
|
intercept = trend_params
|
|
else:
|
|
intercept = np.dot(self._trend_data[1:], trend_params)
|
|
self.ssm[self._idx_state_intercept] += intercept.T
|
|
|
|
if (self._final_trend is not None
|
|
and self._idx_state_intercept[-1].stop == -1):
|
|
self.ssm['state_intercept', :self.k_endog, -1:] += np.dot(
|
|
self._final_trend, trend_params).T
|
|
|
|
# Need to set the last state intercept to np.nan (with appropriate
|
|
# dtype) if we don't have the final exog
|
|
if self.mle_regression and self._final_exog is None:
|
|
nan = np.array(np.nan, dtype=params.dtype)
|
|
self.ssm['state_intercept', :self.k_endog, -1] = nan
|
|
|
|
# 2. Transition
|
|
ar = params[self._params_ar].reshape(
|
|
self.k_endog, self.k_endog * self.k_ar)
|
|
ma = params[self._params_ma].reshape(
|
|
self.k_endog, self.k_endog * self.k_ma)
|
|
self.ssm[self._idx_transition] = np.c_[ar, ma]
|
|
|
|
# 3. State covariance
|
|
if self.error_cov_type == 'diagonal':
|
|
self.ssm[self._idx_state_cov] = (
|
|
params[self._params_state_cov]
|
|
)
|
|
elif self.error_cov_type == 'unstructured':
|
|
state_cov_lower = np.zeros(self.ssm['state_cov'].shape,
|
|
dtype=params.dtype)
|
|
state_cov_lower[self._idx_lower_state_cov] = (
|
|
params[self._params_state_cov])
|
|
self.ssm['state_cov'] = np.dot(state_cov_lower, state_cov_lower.T)
|
|
|
|
# 4. Observation covariance
|
|
if self.measurement_error:
|
|
self.ssm[self._idx_obs_cov] = params[self._params_obs_cov]
|
|
|
|
@contextlib.contextmanager
|
|
def _set_final_exog(self, exog):
|
|
"""
|
|
Set the final state intercept value using out-of-sample `exog` / trend
|
|
|
|
Parameters
|
|
----------
|
|
exog : ndarray
|
|
Out-of-sample `exog` values, usually produced by
|
|
`_validate_out_of_sample_exog` to ensure the correct shape (this
|
|
method does not do any additional validation of its own).
|
|
out_of_sample : int
|
|
Number of out-of-sample periods.
|
|
|
|
Notes
|
|
-----
|
|
We need special handling for simulating or forecasting with `exog` or
|
|
trend, because if we had these then the last predicted_state has been
|
|
set to NaN since we did not have the appropriate `exog` to create it.
|
|
Since we handle trend in the same way as `exog`, we still have this
|
|
issue when only trend is used without `exog`.
|
|
"""
|
|
cache_value = self._final_exog
|
|
if self.k_exog > 0:
|
|
if exog is not None:
|
|
exog = np.atleast_1d(exog)
|
|
if exog.ndim == 2:
|
|
exog = exog[:1]
|
|
try:
|
|
exog = np.reshape(exog[:1], (self.k_exog,))
|
|
except ValueError:
|
|
raise ValueError('Provided exogenous values are not of the'
|
|
' appropriate shape. Required %s, got %s.'
|
|
% (str((self.k_exog,)),
|
|
str(exog.shape)))
|
|
self._final_exog = exog
|
|
try:
|
|
yield
|
|
finally:
|
|
self._final_exog = cache_value
|
|
|
|
@Appender(MLEModel.simulate.__doc__)
|
|
def simulate(self, params, nsimulations, measurement_shocks=None,
|
|
state_shocks=None, initial_state=None, anchor=None,
|
|
repetitions=None, exog=None, extend_model=None,
|
|
extend_kwargs=None, transformed=True, includes_fixed=False,
|
|
**kwargs):
|
|
with self._set_final_exog(exog):
|
|
out = super().simulate(
|
|
params, nsimulations, measurement_shocks=measurement_shocks,
|
|
state_shocks=state_shocks, initial_state=initial_state,
|
|
anchor=anchor, repetitions=repetitions, exog=exog,
|
|
extend_model=extend_model, extend_kwargs=extend_kwargs,
|
|
transformed=transformed, includes_fixed=includes_fixed,
|
|
**kwargs)
|
|
return out
|
|
|
|
|
|
class VARMAXResults(MLEResults):
|
|
"""
|
|
Class to hold results from fitting an VARMAX model.
|
|
|
|
Parameters
|
|
----------
|
|
model : VARMAX instance
|
|
The fitted model instance
|
|
|
|
Attributes
|
|
----------
|
|
specification : dictionary
|
|
Dictionary including all attributes from the VARMAX model instance.
|
|
coefficient_matrices_var : ndarray
|
|
Array containing autoregressive lag polynomial coefficient matrices,
|
|
ordered from lowest degree to highest.
|
|
coefficient_matrices_vma : ndarray
|
|
Array containing moving average lag polynomial coefficients,
|
|
ordered from lowest degree to highest.
|
|
|
|
See Also
|
|
--------
|
|
statsmodels.tsa.statespace.kalman_filter.FilterResults
|
|
statsmodels.tsa.statespace.mlemodel.MLEResults
|
|
"""
|
|
def __init__(self, model, params, filter_results, cov_type=None,
|
|
cov_kwds=None, **kwargs):
|
|
super().__init__(
|
|
model, params, filter_results, cov_type, cov_kwds, **kwargs
|
|
)
|
|
|
|
self.specification = Bunch(**{
|
|
# Set additional model parameters
|
|
'error_cov_type': self.model.error_cov_type,
|
|
'measurement_error': self.model.measurement_error,
|
|
'enforce_stationarity': self.model.enforce_stationarity,
|
|
'enforce_invertibility': self.model.enforce_invertibility,
|
|
'trend_offset': self.model.trend_offset,
|
|
|
|
'order': self.model.order,
|
|
|
|
# Model order
|
|
'k_ar': self.model.k_ar,
|
|
'k_ma': self.model.k_ma,
|
|
|
|
# Trend / Regression
|
|
'trend': self.model.trend,
|
|
'k_trend': self.model.k_trend,
|
|
'k_exog': self.model.k_exog,
|
|
})
|
|
|
|
# Polynomials / coefficient matrices
|
|
self.coefficient_matrices_var = None
|
|
self.coefficient_matrices_vma = None
|
|
if self.model.k_ar > 0:
|
|
ar_params = np.array(self.params[self.model._params_ar])
|
|
k_endog = self.model.k_endog
|
|
k_ar = self.model.k_ar
|
|
self.coefficient_matrices_var = (
|
|
ar_params.reshape(k_endog * k_ar, k_endog).T
|
|
).reshape(k_endog, k_endog, k_ar).T
|
|
if self.model.k_ma > 0:
|
|
ma_params = np.array(self.params[self.model._params_ma])
|
|
k_endog = self.model.k_endog
|
|
k_ma = self.model.k_ma
|
|
self.coefficient_matrices_vma = (
|
|
ma_params.reshape(k_endog * k_ma, k_endog).T
|
|
).reshape(k_endog, k_endog, k_ma).T
|
|
|
|
def extend(self, endog, exog=None, **kwargs):
|
|
# If we have exog, then the last element of predicted_state and
|
|
# predicted_state_cov are nan (since they depend on the exog associated
|
|
# with the first out-of-sample point), so we need to compute them here
|
|
if exog is not None:
|
|
fcast = self.get_prediction(self.nobs, self.nobs, exog=exog[:1])
|
|
fcast_results = fcast.prediction_results
|
|
initial_state = fcast_results.predicted_state[..., 0]
|
|
initial_state_cov = fcast_results.predicted_state_cov[..., 0]
|
|
else:
|
|
initial_state = self.predicted_state[..., -1]
|
|
initial_state_cov = self.predicted_state_cov[..., -1]
|
|
|
|
kwargs.setdefault('trend_offset', self.nobs + self.model.trend_offset)
|
|
mod = self.model.clone(endog, exog=exog, **kwargs)
|
|
|
|
mod.ssm.initialization = Initialization(
|
|
mod.k_states, 'known', constant=initial_state,
|
|
stationary_cov=initial_state_cov)
|
|
|
|
if self.smoother_results is not None:
|
|
res = mod.smooth(self.params)
|
|
else:
|
|
res = mod.filter(self.params)
|
|
|
|
return res
|
|
|
|
@contextlib.contextmanager
|
|
def _set_final_exog(self, exog):
|
|
"""
|
|
Set the final state intercept value using out-of-sample `exog` / trend
|
|
|
|
Parameters
|
|
----------
|
|
exog : ndarray
|
|
Out-of-sample `exog` values, usually produced by
|
|
`_validate_out_of_sample_exog` to ensure the correct shape (this
|
|
method does not do any additional validation of its own).
|
|
out_of_sample : int
|
|
Number of out-of-sample periods.
|
|
|
|
Notes
|
|
-----
|
|
This context manager calls the model-level context manager and
|
|
additionally updates the last element of filter_results.state_intercept
|
|
appropriately.
|
|
"""
|
|
mod = self.model
|
|
with mod._set_final_exog(exog):
|
|
cache_value = self.filter_results.state_intercept[:, -1]
|
|
mod.update(self.params)
|
|
self.filter_results.state_intercept[:mod.k_endog, -1] = (
|
|
mod['state_intercept', :mod.k_endog, -1])
|
|
try:
|
|
yield
|
|
finally:
|
|
self.filter_results.state_intercept[:, -1] = cache_value
|
|
|
|
@contextlib.contextmanager
|
|
def _set_final_predicted_state(self, exog, out_of_sample):
|
|
"""
|
|
Set the final predicted state value using out-of-sample `exog` / trend
|
|
|
|
Parameters
|
|
----------
|
|
exog : ndarray
|
|
Out-of-sample `exog` values, usually produced by
|
|
`_validate_out_of_sample_exog` to ensure the correct shape (this
|
|
method does not do any additional validation of its own).
|
|
out_of_sample : int
|
|
Number of out-of-sample periods.
|
|
|
|
Notes
|
|
-----
|
|
We need special handling for forecasting with `exog`, because
|
|
if we had these then the last predicted_state has been set to NaN since
|
|
we did not have the appropriate `exog` to create it.
|
|
"""
|
|
flag = out_of_sample and self.model.k_exog > 0
|
|
|
|
if flag:
|
|
tmp_endog = concat([
|
|
self.model.endog[-1:], np.zeros((1, self.model.k_endog))])
|
|
if self.model.k_exog > 0:
|
|
tmp_exog = concat([self.model.exog[-1:], exog[:1]])
|
|
else:
|
|
tmp_exog = None
|
|
|
|
tmp_trend_offset = self.model.trend_offset + self.nobs - 1
|
|
tmp_mod = self.model.clone(tmp_endog, exog=tmp_exog,
|
|
trend_offset=tmp_trend_offset)
|
|
constant = self.filter_results.predicted_state[:, -2]
|
|
stationary_cov = self.filter_results.predicted_state_cov[:, :, -2]
|
|
tmp_mod.ssm.initialize_known(constant=constant,
|
|
stationary_cov=stationary_cov)
|
|
tmp_res = tmp_mod.filter(self.params, transformed=True,
|
|
includes_fixed=True, return_ssm=True)
|
|
|
|
# Patch up `predicted_state`
|
|
self.filter_results.predicted_state[:, -1] = (
|
|
tmp_res.predicted_state[:, -2])
|
|
try:
|
|
yield
|
|
finally:
|
|
if flag:
|
|
self.filter_results.predicted_state[:, -1] = np.nan
|
|
|
|
@Appender(MLEResults.get_prediction.__doc__)
|
|
def get_prediction(self, start=None, end=None, dynamic=False,
|
|
information_set='predicted', index=None, exog=None,
|
|
**kwargs):
|
|
if start is None:
|
|
start = 0
|
|
|
|
# Handle end (e.g. date)
|
|
_start, _end, out_of_sample, _ = (
|
|
self.model._get_prediction_index(start, end, index, silent=True))
|
|
|
|
# Normalize `exog`
|
|
exog = self.model._validate_out_of_sample_exog(exog, out_of_sample)
|
|
|
|
# Handle trend offset for extended model
|
|
extend_kwargs = {}
|
|
if self.model.k_trend > 0:
|
|
extend_kwargs['trend_offset'] = (
|
|
self.model.trend_offset + self.nobs)
|
|
|
|
# Get the prediction
|
|
with self._set_final_exog(exog):
|
|
with self._set_final_predicted_state(exog, out_of_sample):
|
|
out = super().get_prediction(
|
|
start=start, end=end, dynamic=dynamic,
|
|
information_set=information_set, index=index, exog=exog,
|
|
extend_kwargs=extend_kwargs, **kwargs)
|
|
return out
|
|
|
|
@Appender(MLEResults.simulate.__doc__)
|
|
def simulate(self, nsimulations, measurement_shocks=None,
|
|
state_shocks=None, initial_state=None, anchor=None,
|
|
repetitions=None, exog=None, extend_model=None,
|
|
extend_kwargs=None, **kwargs):
|
|
if anchor is None or anchor == 'start':
|
|
iloc = 0
|
|
elif anchor == 'end':
|
|
iloc = self.nobs
|
|
else:
|
|
iloc, _, _ = self.model._get_index_loc(anchor)
|
|
|
|
if iloc < 0:
|
|
iloc = self.nobs + iloc
|
|
if iloc > self.nobs:
|
|
raise ValueError('Cannot anchor simulation after the estimated'
|
|
' sample.')
|
|
|
|
out_of_sample = max(iloc + nsimulations - self.nobs, 0)
|
|
|
|
# Normalize `exog`
|
|
exog = self.model._validate_out_of_sample_exog(exog, out_of_sample)
|
|
|
|
with self._set_final_predicted_state(exog, out_of_sample):
|
|
out = super().simulate(
|
|
nsimulations, measurement_shocks=measurement_shocks,
|
|
state_shocks=state_shocks, initial_state=initial_state,
|
|
anchor=anchor, repetitions=repetitions, exog=exog,
|
|
extend_model=extend_model, extend_kwargs=extend_kwargs,
|
|
**kwargs)
|
|
|
|
return out
|
|
|
|
def _news_previous_results(self, previous, start, end, periods,
|
|
revisions_details_start=False,
|
|
state_index=None):
|
|
# TODO: tests for:
|
|
# - the model cloning used in `kalman_smoother.news` works when we
|
|
# have time-varying exog (i.e. or do we need to somehow explicitly
|
|
# call the _set_final_exog and _set_final_predicted_state methods
|
|
# on the rev_mod / revision_results)
|
|
# - in the case of revisions to `endog`, should the revised model use
|
|
# the `previous` exog? or the `revised` exog?
|
|
# We need to figure out the out-of-sample exog, so that we can add back
|
|
# in the last exog, predicted state
|
|
exog = None
|
|
out_of_sample = self.nobs - previous.nobs
|
|
if self.model.k_exog > 0 and out_of_sample > 0:
|
|
exog = self.model.exog[-out_of_sample:]
|
|
|
|
# Compute the news
|
|
with contextlib.ExitStack() as stack:
|
|
stack.enter_context(previous.model._set_final_exog(exog))
|
|
stack.enter_context(previous._set_final_predicted_state(
|
|
exog, out_of_sample))
|
|
|
|
out = self.smoother_results.news(
|
|
previous.smoother_results, start=start, end=end,
|
|
revisions_details_start=revisions_details_start,
|
|
state_index=state_index)
|
|
return out
|
|
|
|
@Appender(MLEResults.summary.__doc__)
|
|
def summary(self, alpha=.05, start=None, separate_params=True):
|
|
from statsmodels.iolib.summary import summary_params
|
|
|
|
# Create the model name
|
|
spec = self.specification
|
|
if spec.k_ar > 0 and spec.k_ma > 0:
|
|
model_name = 'VARMA'
|
|
order = f'({spec.k_ar},{spec.k_ma})'
|
|
elif spec.k_ar > 0:
|
|
model_name = 'VAR'
|
|
order = '(%s)' % (spec.k_ar)
|
|
else:
|
|
model_name = 'VMA'
|
|
order = '(%s)' % (spec.k_ma)
|
|
if spec.k_exog > 0:
|
|
model_name += 'X'
|
|
model_name = [model_name + order]
|
|
|
|
if spec.k_trend > 0:
|
|
model_name.append('intercept')
|
|
|
|
if spec.measurement_error:
|
|
model_name.append('measurement error')
|
|
|
|
summary = super().summary(
|
|
alpha=alpha, start=start, model_name=model_name,
|
|
display_params=not separate_params
|
|
)
|
|
|
|
if separate_params:
|
|
indices = np.arange(len(self.params))
|
|
|
|
def make_table(self, mask, title, strip_end=True):
|
|
res = (self, self.params[mask], self.bse[mask],
|
|
self.zvalues[mask], self.pvalues[mask],
|
|
self.conf_int(alpha)[mask])
|
|
|
|
param_names = []
|
|
for name in np.array(self.data.param_names)[mask].tolist():
|
|
if strip_end:
|
|
param_name = '.'.join(name.split('.')[:-1])
|
|
else:
|
|
param_name = name
|
|
if name in self.fixed_params:
|
|
param_name = '%s (fixed)' % param_name
|
|
param_names.append(param_name)
|
|
|
|
return summary_params(res, yname=None, xname=param_names,
|
|
alpha=alpha, use_t=False, title=title)
|
|
|
|
# Add parameter tables for each endogenous variable
|
|
k_endog = self.model.k_endog
|
|
k_ar = self.model.k_ar
|
|
k_ma = self.model.k_ma
|
|
k_trend = self.model.k_trend
|
|
k_exog = self.model.k_exog
|
|
endog_masks = []
|
|
for i in range(k_endog):
|
|
masks = []
|
|
offset = 0
|
|
|
|
# 1. Intercept terms
|
|
if k_trend > 0:
|
|
masks.append(np.arange(i, i + k_endog * k_trend, k_endog))
|
|
offset += k_endog * k_trend
|
|
|
|
# 2. AR terms
|
|
if k_ar > 0:
|
|
start = i * k_endog * k_ar
|
|
end = (i + 1) * k_endog * k_ar
|
|
masks.append(
|
|
offset + np.arange(start, end))
|
|
offset += k_ar * k_endog**2
|
|
|
|
# 3. MA terms
|
|
if k_ma > 0:
|
|
start = i * k_endog * k_ma
|
|
end = (i + 1) * k_endog * k_ma
|
|
masks.append(
|
|
offset + np.arange(start, end))
|
|
offset += k_ma * k_endog**2
|
|
|
|
# 4. Regression terms
|
|
if k_exog > 0:
|
|
masks.append(
|
|
offset + np.arange(i * k_exog, (i + 1) * k_exog))
|
|
offset += k_endog * k_exog
|
|
|
|
# 5. Measurement error variance terms
|
|
if self.model.measurement_error:
|
|
masks.append(
|
|
np.array(self.model.k_params - i - 1, ndmin=1))
|
|
|
|
# Create the table
|
|
mask = np.concatenate(masks)
|
|
endog_masks.append(mask)
|
|
|
|
endog_names = self.model.endog_names
|
|
if not isinstance(endog_names, list):
|
|
endog_names = [endog_names]
|
|
title = "Results for equation %s" % endog_names[i]
|
|
table = make_table(self, mask, title)
|
|
summary.tables.append(table)
|
|
|
|
# State covariance terms
|
|
state_cov_mask = (
|
|
np.arange(len(self.params))[self.model._params_state_cov])
|
|
table = make_table(self, state_cov_mask, "Error covariance matrix",
|
|
strip_end=False)
|
|
summary.tables.append(table)
|
|
|
|
# Add a table for all other parameters
|
|
masks = []
|
|
for m in (endog_masks, [state_cov_mask]):
|
|
m = np.array(m).flatten()
|
|
if len(m) > 0:
|
|
masks.append(m)
|
|
masks = np.concatenate(masks)
|
|
inverse_mask = np.array(list(set(indices).difference(set(masks))))
|
|
if len(inverse_mask) > 0:
|
|
table = make_table(self, inverse_mask, "Other parameters",
|
|
strip_end=False)
|
|
summary.tables.append(table)
|
|
|
|
return summary
|
|
|
|
|
|
class VARMAXResultsWrapper(MLEResultsWrapper):
|
|
_attrs = {}
|
|
_wrap_attrs = wrap.union_dicts(MLEResultsWrapper._wrap_attrs,
|
|
_attrs)
|
|
_methods = {}
|
|
_wrap_methods = wrap.union_dicts(MLEResultsWrapper._wrap_methods,
|
|
_methods)
|
|
wrap.populate_wrapper(VARMAXResultsWrapper, VARMAXResults) # noqa:E305
|